The package includes 3 Matlab-interfaces to the c-code: 1. inference.m An interface to the full inference package, includes several methods for approximate inference: Loopy Belief Propagation, Generalized Belief Propagation, Mean-Field approximation, and 4 monte-carlo sampling methods (Metropolis, Gibbs, Wolff, Swendsen-Wang). Use "help inference" from Matlab to see all options for usage. 2. gbp_preprocess.m and gbp.m These 2 interfaces split Generalized Belief Propagation into the pre-process stage (gbp_preprocess.m) and the inference stage (gbp.m), so the user may use only one of them, or changing some parameters in between. Use "help gbp_preprocess" and "help gbp" from Matlab. 3. simulatedAnnealing.m An interface to the simulated-annealing c-code. This code uses Metropolis sampling method, the same one used for inference. Use "help simulatedAnnealing" from Matlab.

c_inference_ver2.2
..................\adjCell2Mat.m
..................\adjMat2Cell.m
..................\CalculateEnergy.m
..................\cform2SparseCell.m
..................\chooseInteger.m
..................\c_inference
..................\...........\compileInference.m
..................\...........\compileSimAnneal.m
..................\...........\c_factor_gbp.cpp
..................\...........\c_full_factor_gbp.cpp
..................\...........\c_gbp.cpp
..................\...........\c_gbp_preprocess.cpp
..................\...........\c_inference.cpp
..................\...........\definitions.h
..................\...........\fillMethods.cpp
..................\...........\fillMethods.h
..................\...........\GBP.cpp
..................\...........\GBP.h
..................\...........\gbpPreProc.cpp
..................\...........\GBPPreProcessor.cpp
..................\...........\GBPPreProcessor.h
..................\...........\Gibbs.cpp
..................\...........\Gibbs.h
..................\...........\InferenceAlgorithm.cpp
..................\...........\InferenceAlgorithm.h
..................\...........\LogGBP.cpp
..................\...........\LogGBP.h
..................\...........\LogLoopy.cpp
..................\...........\LogLoopy.h
..................\...........\LogLoopySTime.cpp
..................\...........\LogLoopySTime.h
..................\...........\LogMeanField.cpp
..................\...........\LogMeanField.h
..................\...........\LogPairsGBP.cpp
..................\...........\LogPairsGBP.h
..................\...........\Loopy.cpp
..................\...........\Loopy.h
..................\...........\LoopySTime.cpp
..................\...........\LoopySTime.h
..................\...........\MathFunctions.h
..................\...........\MeanField.cpp
..................\...........\MeanField.h
..................\...........\Metropolis.cpp
..................\...........\Metropolis.h
..................\...........\MonteCarlo.cpp
..................\...........\MonteCarlo.h
..................\...........\MRF.cpp
..................\...........\MRF.h
..................\...........\PairsGBP.cpp
..................\...........\PairsGBP.h
..................\...........\PottsMRF.cpp
..................\...........\PottsMRF.h
..................\...........\Region.cpp
..................\...........\Region.h
..................\...........\RegionLevel.cpp
..................\...........\RegionLevel.h
..................\...........\sim_anneal.cpp
..................\...........\SwendsenWang.cpp
..................\...........\SwendsenWang.h
..................\...........\Wolff.cpp
..................\...........\Wolff.h
..................\factor_gbp.m
..................\full_factor_gbp.m
..................\gbp.m
..................\gbp_preprocess.m
..................\inference.m
..................\MANUAL
..................\psiSqueezeCell.m
..................\rhoMat.m
..................\simulatedAnnealing.m

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